Contact Information

The most reliable means of reaching me is by e-mail.

Access to (password protected) Class presentations and handouts

The *OLD* official MDINF 6600 WWW page

• CASP Special Issues & Links:
  • The official CASP pages.
  • CASP IV, 2001.
  • CASP III, 1999.
  • CASP II, 1997.

• See Biotechniques 32:3, 572-591 (2002) for a review of multiple sequence alignment.

• Sali's WWW pages and links to the Modeller program. Here is a link to a review article describing comparative modeling in Ann. Rev. Biophys. Biomol. Struct. 29, 291-325 (2000). Here is the original reference, a link to a PDF in JMB 234, 779-815 (1993).

• Article: Rost & Sander "Prediction of Protein Secondary Structure at better than 70% accuracy", a PDF in J. Mol. Biol. 232, 584-599 (1993).

• Article: Jones "Protein secondary structure prediction based on position-specific scoring matrices", a PDF in JMB 292, 195-202 (1999).

• Article: Karplus et al. "Predicting protein structure using only sequence information" in Proteins Suppl. 3, 121-125 (1999).

• Article: A classic on the placement of side chains based on a development of library of preferred rotamers, a PDF in JMB 230, 543-574 (1993).