/*  _______________________________________________________________________
 *
 *                        RDPARM/PTRAJ: APR 2000
 *  _______________________________________________________________________
 *
 *  $Header: /thr/gamow/cvsroot/amber7/src/ptraj/rms.h,v 1.4 2000/05/10 21:52:01 cheatham Exp $
 *
 *  Revision: $Revision: 1.4 $
 *  Date: $Date: 2000/05/10 21:52:01 $
 *  Last checked in by $Author: cheatham $
 *
 *  This source is now archived under CVS at Scripps in the amber7 tree.
 *
 *  NOTE: this is a beta, pre-release version, is under constant development,
 *  probably contains some bugs and is under constant revision; therefore
 *  take care.  Please report bugs (and fixes!) to cheatham@chpc.utah.edu or 
 *  cheatham@cgl.ucsf.edu
 *
 *  Do not distribute this code without explicit permission.
 *  Do not incorporate into other codes without explicit permission.
 *
 *  Current contact information:
 *
 *     Thomas Cheatham, III
 *     2000 East, 30 South, Skaggs Hall 201
 *     Department of Medicinal Chemistry
 *     University of Utah
 *     Salt Lake City, UT 84112-5820
 *     cheatham@chpc.utah.edu
 *     (801) 587-9653
 *     FAX: (801) 585-5366
 *
 *  Other contributors:
 *
 *    David Case (Scripps)
 *    Michael Crowley (Scripps)
 *    Jed Pitera (UCSF)
 *    Vickie Tsui (Scripps)
 *  _______________________________________________________________________
 */

/* Header file for rms.c */

#ifndef RMS_MODULE
#  ifdef __STDC__

double rms(int n, int mode, double *weights, int *mask,
	   double *toFitX, double *toFitY, double *toFitZ,
	   double *X, double *Y, double *Z, 
	   double rotation[3][3], double translation[3], int fit);

double rmsf(int n, int mode, double *weights, int *mask,
	   float *toFitX, float *toFitY, float *toFitZ,
	   float *X, float *Y, float *Z, 
	   float rotation[3][3], float translation[3], int fit);
#  else

double rms();
double rmsf();

#  endif
#endif