Fiorella, R.P., R. Bares, J.C. Lin, and G. J. Bowen, Wintertime decoupling of urban valley and rural ridge water vapor revealed through stable water isotopes, Atmospheric Environment,, 2019.

Raczka, B.M., H.F. Duarte, C. Frankenberg, K. Grossmann, P. Kohler, J.E. Lee, J.C. Lin, B. Logan, T. Magney, J. Stutz, and D.R. Bowling, Sustained non-photochemical quenching shapes the seasonal pattern of solar-induced fluorescence at a high-elevation evergreen forest, Journal of Geophysical Research-Biogeosciences, 124,, 2019.

Moravek, A., J.G. Murphy, A. Hrdina, J.C. Lin, C. Pennell, A. Franchin, A.M. Middlebrook, D. Fibiger, C. Womack, E.E. McDuffie, R. Martin, K, Moore, J.A. Thornton, M. Baasandorj, and S.S. Brown, Wintertime Spatial Distribution of Ammonia and its Emission Sources in the Great Salt Lake Region, Atmospheric Chemistry and Physics Discussions,, 2019.

Foster, C.S., E.T. Crosman, J.D. Horel, S. Lyman, B. Fasoli, R. Bares, and J.C. Lin, Quantifying methane emissions in the Uintah Basin during wintertime stagnation episodes, Elementa, 7(1),, 2019.

Womack, C., E. McDuffie, P. Edwards, R. Bares, J. de Gouw, K. Docherty, W. Dube, D. Fibiger, A. Franchin, J. Gilman, L. Goldberger, B. Lee, J. Lin, R. Long, A. Middlebrook, et al., Wintertime ammonium nitrate aerosol pollution in urban areas: NOx and VOC control as mitigation strategies, Geophysical Research Letters, 46, 4971-4979,, 2019.

Hernandez, A.J., L.A. Morales-Rincon, D. Wu, D. Mallia, J.C. Lin, and R. Jimenez, Transboundary transport of biomass burning aerosols and photochemical pollution in the Orinoco river basin, Atmospheric Environment,, 2019.

Bares, R., L. Mitchell, B. Fasoli, D. Catharine, M. Garcia, D. Bowling, J. Ehleringer, and J.C. Lin, The Utah urban carbon dioxide (UUCON) and Uintah Basin greenhouse gas networks: Instrumentation, data and measurement uncertainty, Earth System Science Data Discussions,, 2019.

Lin, J.C. Lin, L. Mitchell, M. Buchert, E. Crosman, D. Mendoza, K. Gurney, R. Patarasuk, D. Bowling, D. Pataki, R. Bares, B. Fasoli, D. Catharine, M. Baasandorj, A. Jacques, S. Hoch, J. Horel, and J. Ehleringer, CO2 and carbon emissions from cities: linkages to air quality, socioeconomic activity and stakeholders in the Salt Lake City urban area, Bulletin of the American Meteorological Society,, 2018.

Skiles, S.M., D.V. Mallia, A.G. Hallar, J.C. Lin, A. Lambert, R. Petersen, and S. Clark, Implications of a shrinking Great Salt Lake for dust on snow deposition in the Wasatch Mountains, UT: A source to sink case study from the April 13th, 2017 dust event, Environmental Research Letters, 13, doi:10.1088/1748-9326/aaefd8, 2018.

Wu, D., J.C. Lin, T. Oda, X. Ye, T. Lauvaux, E.G. Yang, and E.A. Kort, A Lagrangian Approach Towards Extracting Signals of Urban CO2 Emissions from Satellite Observations of Atmospheric Column CO2 (XCO2): X-Stochastic Time-Inverted Lagrangian Transport model ("X-STILT"), Geoscientific Model Development, 11, 4843-4871,, 2018.

Zuromski, L., D.R. Bowling, P. Kohler, C. Frankenberg, M.L. Goulden, and J.C. Lin, Solar-induced fluorescence detects inter-annual variation in gross primary production of coniferous forests in the western United States, Geophysical Research Letters,, 2018.

Mitchell, L.E., E.T. Crosman, A. Jacques, B. Fasoli, J. Horel, D.R. Bowling, J.R. Ehleringer, L. Leclair-Marzold, and J.C. Lin, Monitoring of trace gases and pollutants across an urban area using a light-rail public transit platform, Atmospheric Environment, 187, 9-23,, 2018.

Mallia, D.V., A. Kochanski, S.P. Urbanski, and J.C. Lin, Optimizing smoke modeling approaches at local scales, Atmosphere, 9, 166,, 2018.

Mitchell, L.E., J.C. Lin, D.R. Bowling, D.E. Pataki, C. Strong, A.J. Schauer, R. Bares, S.E. Bush, B.B. Stephens, D. Mendoza, D. Mallia, L. Holland, K.R. Gurney, and J.R. Ehleringer, Long-term urban carbon dioxide observations reveal spatial and temporal dynamics related to urban form and growth, Proceedings of the National Academy of Sciences,, 2018.

Bares, R., J.C. Lin, S. Hoch, M. Baasandorj, D. Mendoza, B. Fasoli, L. Mitchell, and B. Stephens, The wintertime co-variation of CO2 and criteria pollutants in an urban valley of the Western U.S., Journal of Geophysical Research-Atmospheres,, 2018.

Fasoli, B., J.C. Lin, D.R. Bowling, L. Mitchell, and D. Mendoza, Simulating atmospheric tracer concentrations for spatially distributed receptors: updates to the Stochastic Time-Inverted Lagrangian Transport model's R interface (STILT-R version 2), Geoscientific Model Development Discussions,, 2018.

Fiorella, R.P., R. Bares, J.C. Lin, J.R. Ehleringer, and G.J. Bowen, Detection and variability of combustion-derived vapor in an urban basin, Atmospheric Chemistry and Physics, 18, 8529-8547,, 2018.

Davison, J., H.-T. Hwang, E.A. Sudicky, D.V. Mallia, and J.C. Lin, Full coupling between the atmosphere, surface and subsurface for integrated hydrologic simulation, Journal of Advances in Modeling Earth Systems,, 2018.

Ye, X., T. Lauvaux, E. A. Kort, T. Oda, S. Feng, J.C. Lin, E. Yang, and D. Wu, Constraining fossil fuel CO2 emissions from urban area using OCO-2 observations of total column CO2, Atmospheric Chemistry and Physics Discussions,, 2017.

Foster, C.S., E.T. Crosman, L. Holland, D.V. Mallia, B. Fasoli, R. Bares, J. Horel, and J.C. Lin, Constraining methane emissions in Utah's Uintah Basin with ground-based observations and a time-reversed Lagrangian transport model, Journal of Geophysical Research-Atmospheres, 122,, 2017.

Mallia, D.V., A. Kochanski, D. Wu, C. Pennell, W. Oswald, and J.C. Lin, Wind-blown dust modeling using a backward Lagrangian particle dispersion model, Journal of Applied Meteorology and Climatology, 56, 2845-2867,, 2017.

Lin, J.C., D. Mallia, D. Wu, and B.B. Stephens: How can mountaintop CO2 observations be used to constrain regional carbon fluxes?, Atmospheric Chemistry and Physics, 17, 5561-5581, doi:10.5194/acp-17-5561-2017, 2017.

Luus, K.A., R. Commane, N.C. Parazoo, J.S. Benmergui, S.E. Euskirchen, C. Frankenberg, J. Joiner, J. Lindaas, C.E. Miller, W.C. Oechel, D. Zona, S. Wofsy, and J.C. Lin, Tundra photosynthesis captured by satellite observed solar-induced chlorophyll fluorescence, Geophysical Research Letters, 44, 1564-1573, doi:10.1002/2016GL070842, 2017.

Duarte, H., B. Raczka, C. Koven, D. Ricciuto, J.C. Lin, D.R. Bowling, and J.R. Ehleringer: Evaluating the Community Land Model (CLM 4.5) at a coniferous forest site in Northwestern United States using flux and carbon-isotope measurements, Biogeosciences, 14, 4315-4340, doi:10.5194/bg-14-4315-2017, 2017.

Patarasuk, R., K.R. Gurney, D. O'Keefe, Y. Song, J. Huang, P. Rao, M. Buchert, J.C. Lin, D. Mendoza, and J.R. Ehleringer, Urban high-resolution fossil fuel CO2 emissions quantification and exploration of emission drivers for potential policy applications, Urban Ecosystems, doi:10.1007/s11252-016-0553-1, 2016.

Raczka, B., H.F. Duarte, C.D. Koven, D. Ricciuto, P.E. Thornton, J.C. Lin, and D.R. Bowling: An observational constraint on stomatal function in forests: evaluating coupled carbon and water vapor exchange with carbon isotopes in the Community Land Model (CLM 4.5), Biogeosciences, 13, 5183-5204, doi:10.5194/bg-13-5183-2016, 2016.

Karion, A., C. Sweeney, J.B. Miller, A. Andrews, R. Commane, S. Dinardo, J. Henderson, J. Lindaas, J. Lin, K. Luus, T. Newberger, P. Tans, S. Wofsy, S. Wolter, and C.E. Miller, Investigating Alaskan methane and carbon dioxide fluxes using measurements from the CARVE tower, Atmospheric Chemistry and Physics, 16, 5383-5398, doi:10.5194/acp-16-5383-2016, 2016.

Davison, J.H., H.-T. Hwang, E.A. Sudicky, and J.C. Lin, Coupled Atmospheric, Land Surface, and Subsurface Modeling: Exploring Water and Energy Feedbacks in Three-Dimensions, Advances in Water Resources, 86, 73-85, doi:10.1016/j.advwatres.2015.09.002, 2015.

Viatte, C., K. Strong, J. Hannigan, E. Nussbaumer, L.K. Emmons, S. Conway, C. Paton-Walsh, J. Hartley, J. Benmergui, and J.C. Lin, Identifying fire plumes in the Arctic with tropospheric FTIR measurements and transport models, Atmospheric Chemistry and Physic, 15, 2227-2246, doi:10.5194/acp-15-2227-2015, 2015.

Luus, K.A. and J.C. Lin, The Polar Vegetation Photosynthesis and Respiration Model (PolarVPRM): a parsimonious, satellite data-driven model of high-latitude CO2 exchange, Geoscientific Model Development, 8, 2655-2674, doi:10.5194/gmd-8-2655-2015, 2015.

Mallia, D.V., J.C. Lin, S. Urbanski, J. Ehleringer, and T. Nehrkorn, Impacts of upstream wildfire emissions on CO, CO2, and PM2.5 concentrations in Salt Lake City, Utah, J. Geophys. Res.-Atmos., 120, doi:10.1002/2014JD022472, 2015.

Lin, J.C. and D. Wen, A method to quantitatively apportion pollutants at high spatial and temporal resolution: the Stochastic Lagrangian Apportionment Method (SLAM), Environmental Science and Technology, 49, 351-360, doi: 10.1021/es505603v, 2015.

Viatte, C., K. Strong, J. Hannigan, E. Nussbaumer, L. Emmons, S. Conway, C. Paton-Walsh, J. Hartley, J. Benmergui, and J.C. Lin, Identifying fire plumes in the Arctic with tropospheric FTIR measurements and transport models, Atmospheric Chemistry and Physics, 15, 2227-2246, doi:10.5194/acp-15-2227-2015, 2015.

Good, S., D. Mallia, J.C. Lin, and G. Bowen, Stable Isotope Analysis of Precipitation Samples Obtained Via Crowdsourcing Reveals the Spatiotemporal Evolution of Superstorm Sandy, PLoS One, 9(3), doi:10.1371/journal.pone.0091117.g001, 2014.

Wen, D., L. Zhang, J.C. Lin, R. Vet, and M.D. Moran, An evaluation of ambient ammonia concentrations over southern Ontario simulated with different dry deposition schemes within STILT-Chem v0.8, Geoscientific Model Development, 7, 1037-1050, doi:10.5194/gmd-7-1037-2014, 2014.

Luus, K.A., R.E.J. Kelly, J.C. Lin, D.R. Humphreys, P. Lafleur, and W.C. Oechel, Modeling the influence of snow cover on low Arctic net ecosystem exchange, Environmental Research Letters, doi:10.1088/1748-9326/8/3/035045, 2013.

Kim, S., D. Millet, L. Hu, M. Mohr, T. Griffis, D. Wen, J.C. Lin, S. Miller, and M. Longo, Constraints on carbon monoxide emissions in the United States based on tall tower measurements, Environmental Science and Technology, 47, 8316-8324, 2013.

Luus, K.A., Y. Gel, J.C. Lin, R.E.J. Kelly, and C.R. Duguay, Pan-Arctic linkages between snow accumulation and growing season air temperature, soil moisture and vegetation, Biogeosciences, 10, 7575-7597, doi:10.5194/bgd-10-1747-2013, 2013.

Bowman, K.P., J.C. Lin, A. Stohl, R. Draxler, P. Konopka, M. Bourqui, A. Andrews, and D. Brunner. Input Data Requirements for Lagrangian Trajectory Models, Bulletin of the American Meteorological Society, doi:10.1175/BAMS-D-12-00076.1, July, 2013.

Luus, K.A., J.C. Lin, R.E.J. Kelly, and C.R. Duguay. Subnivean Arctic and sub-Arctic net ecosystem exchange (NEE): Towards representing snow season processes in models of NEE using cryospheric remote sensing, Progress in Physical Geography, 37(4), doi:10.1177/0309133313491130,484-515, 2013.

Wen, D., J.C. Lin, L. Zhang, R. Vet, and M.D. Moran. Modeling atmospheric ammonia and ammonium using a stochastic Lagrangian air quality model (STILT-Chem v0.7), Geosci. Model Dev., 6, 327-344, 2013. [PDF]

Benmergui, J., S. Sharma, D. Wen, and J.C. Lin. Quantitative attribution of processes affecting atmospheric chemical concentrations by combining a time-reversed Lagrangian particle dispersion model and a regression approach, In Lagrangian Modeling of the Atmosphere, AGU Geophysical Monograph Vol. 200, Edited by Lin, J.C., D. Brunner, C. Gerbig, A. Stohl, A. Luhar, and P. Webley, 2012.

Lin, J.C. and C. Gerbig. How can we satisfy the well-mixed criterion in highly inhomogeneous flows?, In Lagrangian Modeling of the Atmosphere, AGU Geophysical Monograph Vol. 200, Edited by Lin, J.C., D. Brunner, C. Gerbig, A. Stohl, A. Luhar, and P. Webley, 2012.

Wen, D., J.C. Lin, D.B. Millet, A.F. Stein, and R.R. Draxler. A backward-time stochastic Lagrangian air quality model, Atmospheric Environment, 54, 373-386, doi:10.1016/j.atmosenv.2012.02.042, 2012. [PDF]

Lin, J.C. and D. Worthy. What do atmospheric greenhouse gas (GHG) concentrations tell us about regional sources and sinks in Canada?, In "Ecosystems in Flux: Carbon, Climate, and Disturbance in Northern Forests and Peatlands", Edited by Carole Coursolle, Published by the Canadian Carbon Program, Pg. 28-29, 2011. [PDF]

Lin, J.C., D. Brunner, and C. Gerbig. Studying atmospheric transport through Lagragian models, EOS, 92 (21), 177-184, 24 May 2011. [PDF]

Erickson, T.A., A.M. Michalak, and J.C. Lin. A data system for visualizing 4-D atmospheric CO2 models and data, OSGeo Journal, 8, 37-47, 2011. [PDF]

Lin, J.C., M.R. Pejam, E. Chan, S.C. Wofsy, E.W. Gottlieb, H.A. Margolis, and J.H. McCaughey. Attributing uncertainties in simulated biospheric carbon fluxes to different sources of error, Global Biogeochemical Cycles, 25, GB2018, doi:10.1029/2010GB003884. [PDF]

Gourdji, S.M., K.L. Mueller, V. Yadav, D.N. Huntzinger, A.E. Andrews, M. Trudeau, G. Petron, T. Nehrkorn, J. Eluszkiewicz, J. Henderson, D. Wen,, J.C. Lin, et al. North American CO2 exchange: intercomparison of modeled estimates with results from a fine-scale atmospheric inversion, Biogeosciences Discuss., 8, 6775-6832.

Chan, E. and J.C. Lin. What is the value of agricultural census data in carbon cycle studies?, J. Geophys. Res.-Biogeosciences, 116, G03012, doi:10.1029/2010JG001617, 2011. [PDF]

Wen, D., J.C. Lin, F. Meng, P.K. Gbor, Z. He, and J.J. Sloan. Quantitative assessment of upstream source influences on total gaseous mercury observations in Ontario, Canada, Atmospheric Chemistry and Physics, 11, 1405-1415, 2011. [PDF]

Nehrkorn, T., J. Eluszkiewicz, S.C. Wofsy, Lin, J.C., C. Gerbig, M. Longo, and S. Freitas. Coupled Weather Research and Forecasting--Stochastic Time-Inverted Lagrangian Transport (WRF-STILT) Model, Meteorology and Atmospheric Physics, 107, 51-64, 2010. [PDF]

Lin, J.C., J.H. Tai, C.H. Feng, and D.E. Lin. Towards improving forecasts of visibility in Taiwan: A statistical approach, Terrestrial, Atmospheric and Oceanic Sciences, 21(2), 359-374, 2010.

Alam, J. and J.C. Lin. Towards a fully Lagrangian atmospheric modelling system, Monthly Weather Review, 136(12), 4653-4667, 2008. [PDF]

Wang, J.-W., K. Wang, R.A. Pielke, J.C. Lin, and T. Matsui. Towards a Robust Test on North America Warming Trend and Precipitable Water Content Increase, Geophysical Research Letters, 35(L18804), doi:10.1029/2008GL034564, 2008. [PDF]

Gerbig, C., S. Korner, and J.C. Lin. Vertical mixing in atmospheric tracer transport models: error characterization and propagation, Atmospheric Chemistry and Physics, 8, 591-602, 2008. [PDF]

Mahadevan, P., S.C. Wofsy, D.M. Matross, X. Xiao, A.L. Dunn, J.C. Lin, et al., A Satellite-Based Biosphere Parameterization for Net Ecosystem CO2 Exchange: Vegetation Photosynthesis and Respiration Model (VPRM), Global Biogeochemical Cycles, 22, doi:10.1029/2006GB002735, 2008. [PDF]

Lin, J.C., C. Gerbig., S.C. Wofsy, R. Draxler, V.Y. Chow, and E.W. Gottlieb. Designing Lagrangian experiments to measure regional-scale trace gas fluxes, J. Geophys. Res., 112 (D13312), doi:10.1029/2006JD008077, 2007. [PDF]

Miller, S.M., D.M. Matross, A.E. Andrews, D.B. Millet, M. Longo, E.W. Gottlieb, A.I. Hirsch, C. Gerbig, J.C. Lin, et al., Sources of carbon monoxide and formaldehyde in North America determined from high-resolution atmospheric data, Atmospheric Chemistry and Physics, 8, 7673-7696, 2008.[PDF]

Pielke, R.A. Sr., J. Adegoke, A. Beltran-Przekurat, C.A. Hiemstra, J.C. Lin, et al. An overview of regional land use and land cover impacts on rainfall, Tellus, 59B, 587-601, 2007.

Lin, J.C., T. Matsui, R.A. Pielke, Sr., C. Kummerow. Effects of biomass burning-derived aerosols on precipitation and clouds in the Amazon Basin:  A satellite-based empirical study, J. Geophys. Res., 111 (D19204), doi:10.1029/2005JD006884, 2006. [PDF]

Hurst, D., J.C. Lin, P. Romashkin, C. Gerbig, et al., Continuing global significance of emissions of Montreal Protocol-restricted halocarbons in the United States and Canada, J. Geophys. Res., 111 (D15302), doi:10.1029/2005JD006785, 2006. [PDF]

Lin, J.C., Gerbig, C., Wofsy, S.C., Daube, B.C., et al. What have we learned from intensive atmospheric sampling field programs of CO2?, Tellus, 58B, 331-343, 2006. [PDF]

Matross, D.M., A. Andrews, M. Pathmathevan, C. Gerbig, J.C. Lin, et al.  Estimating regional carbon exchange in New England & Quebec by combining atmospheric, ground-based, and satellite data, Tellus, 58B, 344-358, 2006. [PDF]

Gerbig, C., J.C. Lin, J.W. Munger, and S.C. Wofsy, What can tracer observations in the continental boundary layer tell us about surface-atmosphere fluxes?, Atmospheric Chemistry and Physics, 6, 539-554, 2006. [PDF]

Lin, J.C. and C. Gerbig.  Accounting for the effect of transport errors on tracer inversions, Geophysical Research Letters, 32 (L01802), doi:10.1029/2004GL021127, 2005. [PDF]

Lin, J.C., C. Gerbig, et al., An empirical analysis of the spatial variability of atmospheric CO2:  implications for inverse analyses and space-borne sensors, Geophys. Res. Lett., 31 (L23104), doi:10.1029/2004GL020957, 2004. [PDF]

Contributing Author to Science Implementation Strategy to the North American Carbon Program, U.S. Global Change Research Program, 2004. 

Lin, J.C., C. Gerbig, S.C. Wofsy, et al., Measuring fluxes of trace gases at regional scales by Lagrangian observations:  Application to the CO2 Budget and Rectification Airborne (COBRA) study, J. Geophys. Res., 109 (D15304, doi:10.1029/2004JD004754), 2004. [PDF]

Contributing Author to The North American Carbon Program, U.S. Global Change Research Program, 2001. [PDF]

Xueref, I., C. Gerbig, A. Fridlind, J.C. Lin, et al., Combining a receptor-oriented framework for tracer distributions with a cloud-resolving model to study transport in deep convective clouds: Application to the NASA CRYSTAL-FACE campaign, Geophysical Research Letters, 31(L14106), doi:10.1029/2004GL019811, 2004.

Yi, C., K.J. Davis, P.S. Bakwin, A.S. Denning, N. Zhang, A. Desai, J.C. Lin, and C. Gerbig, The observed covariance between ecosystem carbon exchange and atmospheric boundary layer dynamics at a site in northern Wisconsin, J.  Geophys. Res., 109 (D08302), doi:10.1029/2003JD004164, 2004.

Lin, J.C., C. Gerbig, S.C. Wofsy, et al., A near-field tool for simulating the upstream influence of atmospheric observations: The Stochastic Time-Inverted Lagrangian Transport (STILT) model, J. Geophy. Res., 108(D16), 4493, doi:10.1029/2002JD003161, 2003. [PDF]

Wofsy, S.C., C. Gerbig, and J.C. Lin, Determination of CO2 Sources and Sinks on the Continental and Regional Scales, 12th WMO/IAEA Meeting of Experts on CO2 and related tracer techniques, Toronto, Sept. 2003, WMO/GAW publication No.161, 71-78, 2003. [PDF]

Lin, J.C. Constraining Sources & Sinks of Carbon at the Regional Scale with Aircraft Observations, Ph.D. thesis, Harvard University, Cambridge, MA, 2003.  Available from UMI:  (

Gerbig, C., J.C. Lin, S.C. Wofsy, B.C. Daube, et al.. Toward constraining regional-scale fluxes of CO2 with atmospheric observations over a continent:  1. Observed spatial variability from airborne platforms, J. Geophys. Res., 108(D24), 4756, doi:10.1029/2002JD003018, 2003. [PDF]

Gerbig, C., J.C. Lin, S.C. Wofsy, B.C. Daube, et al., Toward constraining regional-scale fluxes of CO2 with atmospheric observations over a continent:  2. Analysis of COBRA data using a receptor-oriented framework, J. Geophys. Res., 108(D24), 4757, doi:10.1029/2003JD003770, 2003. [PDF]

Chou, W.W., S.C. Wofsy, R.C. Harriss, J.C. Lin, C. Gerbig, and G.W. Sachse. Net fluxes of CO2 in Amazonia derived from aircraft observations, J. Geophys. Res.,107(D22), 4614, 10.1029/2001JD001295, 2002. [PDF]